Transcript: ENST00000394821.2 SLC6A4-001

Description

solute carrier family 6 (neurotransmitter transporter), member 4 [Source:HGNC Symbol;Acc:11050]

Gene Synonyms

5-HTT, 5-HTTLPR, 5HTT, HTT, OCD1, SERT, SERT1, hSERT

Location

Chromosome 17: 28,525,513-28,562,716 reverse strand.

About this transcript

This transcript has 15 exons, is annotated with 32 domains and features, is associated with 16105 variant alleles and maps to 546 oligo probes.

Gene

This transcript is a product of gene ENSG00000108576.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000401766.2	SLC6A4-002	6543	630aa	ENSP00000385822.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11256	B3VRQ0 B3VRQ5 B3VRR0 B3VRR5 B3VRS0 B3VRS5 B3VRU0 B3VRU5 B3VRV0 B3VRV5 B3VRW0 J3KPR9 P31645 Q9NYN7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000261707.3	SLC6A4-201	4516	630aa	ENSP00000261707.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11256	B3VRQ0 B3VRQ5 B3VRR0 B3VRR5 B3VRS0 B3VRS5 B3VRU0 B3VRU5 B3VRV0 B3VRV5 B3VRW0 J3KPR9 P31645 Q9NYN7	NM_001045.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000394821.2	SLC6A4-001	2160	618aa	ENSP00000378298.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3VRQ0 B3VRQ5 B3VRR0 B3VRR5 B3VRS0 B3VRS5 B3VRU0 B3VRV0 B3VRV5 B3VRW0 J3KPR9 Q9NYN7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000579221.1	SLC6A4-003	1069	72aa	ENSP00000463172.1	Nonsense mediated decay		B3VRQ0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000578609.1	SLC6A4-004	566	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 13, Transcript length: 2,160 bps, Translation length: 618 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000394821.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000256114 (version 3)

Favourite species

All species

Recent locations

Transcript: ENST00000394821.2 SLC6A4-001

Summary