Transcript: ENST00000263054.6 SORCS1-001

Description

sortilin-related VPS10 domain containing receptor 1 [Source:HGNC Symbol;Acc:16697]

Gene Synonyms

SORCS, hSorCS, sorCS1

Location

Chromosome 10: 108,333,421-108,924,292 reverse strand.

About this transcript

This transcript has 26 exons, is annotated with 17 domains and features, is associated with 272873 variant alleles and maps to 852 oligo probes.

Gene

This transcript is a product of gene ENSG00000108018.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000263054.6	SORCS1-001	7272	1168aa	ENSP00000263054.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7559	Q8WY21	NM_052918.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000344440.6	SORCS1-201	3612	1198aa	ENSP00000345964.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31283	B3KVZ0 Q8WY21	NM_001206572.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000369698.1	SORCS1-002	2638	714aa	ENSP00000358712.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000452214.1	SORCS1-004	663	213aa	ENSP00000407769.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000478809.2	SORCS1-007	826	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000472196.1	SORCS1-005	629	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000473866.1	SORCS1-003	2313	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000486192.1	SORCS1-006	632	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 26, Coding exons: 26, Transcript length: 7,272 bps, Translation length: 1,168 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8WY21

CCDS

This transcript is a member of the Human CCDS set: CCDS7559

Version

ENST00000263054.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000050232 (version 4)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000263054.6 SORCS1-001

Summary