Transcript: ENST00000370228.1 C10orf2-002

Description

chromosome 10 open reading frame 2 [Source:HGNC Symbol;Acc:1160]

Gene Synonyms

ATXN8, FLJ21832, IOSCA, MTDPS7, PEO, PEO1, PEOA3, SANDO, SCA8, TWINKLE, TWINL

Location

About this transcript

This transcript has 5 exons, is annotated with 7 domains and features, is associated with 3319 variant alleles and maps to 354 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000370228.1	C10orf2-002	3175	582aa	ENSP00000359248.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53570	Q96RR1	NM_001163814.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000311916.2	C10orf2-001	3131	684aa	ENSP00000309595.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7506	E5KSY5 Q96RR1 Q9H6V3	NM_021830.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000473656.1	C10orf2-004	946	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000476766.1	C10orf2-003	838	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000459764.1	C10orf2-005	327	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 3,175 bps, Translation length: 582 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96RR1

CCDS

This transcript is a member of the Human CCDS set: CCDS53570

Version

ENST00000370228.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000049887 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.