Transcript: ENST00000329399.6 PDLIM1-001

Description

PDZ and LIM domain 1 [Source:HGNC Symbol;Acc:2067]

Gene Synonyms

CLIM1, CLP-36, CLP36, HEL-S-112, hCLIM1

Location

About this transcript

This transcript has 7 exons, is annotated with 15 domains and features, is associated with 21605 variant alleles and maps to 410 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000329399.6	PDLIM1-001	1452	329aa	ENSP00000360305.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7441	O00151	NM_020992.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000477757.1	PDLIM1-002	850	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000493949.1	PDLIM1-003	795	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490391.1	PDLIM1-005	458	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000492511.1	PDLIM1-004	453	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 1,452 bps, Translation length: 329 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O00151

CCDS

This transcript is a member of the Human CCDS set: CCDS7441

Version

ENST00000329399.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000049508 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.