Transcript: ENST00000374308.1 PTGR1-005

Description

prostaglandin reductase 1 [Source:HGNC Symbol;Acc:18429]

Gene Synonyms

LTB4DH, PGR1, ZADH3

Location

Chromosome 9: 114,354,647-114,361,687 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 3300 variant alleles and maps to 218 oligo probes.

Gene

This transcript is a product of gene ENSG00000106853.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000407693.2	PTGR1-202	1407	329aa	ENSP00000385763.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6779	Q14914	NM_001146108.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000309195.5	PTGR1-001	1223	329aa	ENSP00000311572.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6779	Q14914	NM_012212.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000538962.1	PTGR1-203	1220	301aa	ENSP00000440281.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55331	Q14914	NM_001146109.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000238248.3	PTGR1-201	1166	177aa	ENSP00000238248.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F2Z3J9 Q5JVP3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000422125.1	PTGR1-002	461	119aa	ENSP00000395965.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JVP2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000374324.1	PTGR1-004	2298	73aa	ENSP00000363444.1	Nonsense mediated decay		F6XGT7	-	-
ENST00000466771.1	PTGR1-006	1094	118aa	ENSP00000435665.1	Nonsense mediated decay		F2Z3J9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000374313.1	PTGR1-003	1061	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000374308.1	PTGR1-005	847	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000485319.1	PTGR1-007	389	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 847 bps,

Version

ENST00000374308.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000053651 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000374308.1 PTGR1-005

Summary