Transcript: ENST00000475086.1 SPATA6L-009

Description

spermatogenesis associated 6-like [Source:HGNC Symbol;Acc:25472]

Gene Synonyms

C9orf68, FLJ10058, bA6J24.2

Location

Chromosome 9: 4,600,610-4,666,666 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 5 domains and features, is associated with 39232 variant alleles and maps to 342 oligo probes.

Gene

This transcript is a product of gene ENSG00000106686.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000454239.2	SPATA6L-202	3910	392aa	ENSP00000404277.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8N4H0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381895.5	SPATA6L-201	1854	269aa	ENSP00000371319.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7ENB5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000475086.1	SPATA6L-009	1444	334aa	ENSP00000417063.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43785	Q8N4H0	NM_001039395.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381890.5	SPATA6L-012	1295	291aa	ENSP00000371314.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W9P2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000485616.1	SPATA6L-001	2437	190aa	ENSP00000420003.1	Nonsense mediated decay		Q9NWF6	-	-
ENST00000406861.2	SPATA6L-010	1854	165aa	ENSP00000384342.2	Nonsense mediated decay		Q8N4H0	-	-
ENST00000486047.1	SPATA6L-008	1843	165aa	ENSP00000417965.1	Nonsense mediated decay		Q8N4H0	-	-
ENST00000461761.1	SPATA6L-002	1747	392aa	ENSP00000418458.1	Nonsense mediated decay		Q8N4H0	-	-
ENST00000223517.5	SPATA6L-004	895	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496798.1	SPATA6L-016	731	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000498087.1	SPATA6L-013	589	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000497383.1	SPATA6L-014	566	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485981.1	SPATA6L-015	488	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000451763.2	SPATA6L-011	4073	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000471669.1	SPATA6L-006	513	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 9, Transcript length: 1,444 bps, Translation length: 334 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8N4H0

CCDS

This transcript is a member of the Human CCDS set: CCDS43785

Version

ENST00000475086.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000354814 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000475086.1 SPATA6L-009

Summary