Transcript: ENST00000336180.2 LIMK1-001

Description

LIM domain kinase 1 [Source:HGNC Symbol;Acc:6613]

Gene Synonyms

LIMK, LIMK-1

Location

Chromosome 7: 73,498,270-73,536,855 forward strand.

About this transcript

This transcript has 16 exons, is annotated with 30 domains and features, is associated with 17948 variant alleles and maps to 610 oligo probes.

Gene

This transcript is a product of gene ENSG00000106683.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000418310.1	LIMK1-002	3360	677aa	ENSP00000409717.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PC47	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000336180.2	LIMK1-001	3219	647aa	ENSP00000336740.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5563	P53667 Q75MU4	NM_002314.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000538333.3	LIMK1-005	2170	613aa	ENSP00000444452.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56491	P53667	NM_001204426.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000435201.1	LIMK1-003	1883	305aa	ENSP00000414606.1	Nonsense mediated decay		P53667 Q75MU0 Q75MU4	-	-
ENST00000491052.1	LIMK1-007	587	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000486361.1	LIMK1-006	569	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000483414.1	LIMK1-004	3374	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000476792.1	LIMK1-008	785	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 3,219 bps, Translation length: 647 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P53667

CCDS

This transcript is a member of the Human CCDS set: CCDS5563

Version

ENST00000336180.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000252335 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000336180.2 LIMK1-001

Summary