Transcript: ENST00000487091.1 CLIP2-003

Description

CAP-GLY domain containing linker protein 2 [Source:HGNC Symbol;Acc:2586]

Gene Synonyms

CLIP, CLIP-115, CYLN2, KIAA0291, WBSCR3, WBSCR4, WSCR3, WSCR4

Location

Chromosome 7: 73,790,400-73,795,371 forward strand.

About this transcript

This transcript has 2 exons, is associated with 2309 variant alleles and maps to 90 oligo probes.

Gene

This transcript is a product of gene ENSG00000106665.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000223398.6	CLIP2-201	5563	1046aa	ENSP00000223398.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5569	Q7Z5B7 Q9UDT6	NM_003388.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000361545.5	CLIP2-001	5445	1011aa	ENSP00000355151.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5570	Q7Z5B7 Q9UDT6	NM_032421.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000395060.1	CLIP2-002	3141	1046aa	ENSP00000378500.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5569	Q7Z5B7 Q9UDT6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000487447.1	CLIP2-008	564	28aa	ENSP00000419938.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000493166.1	CLIP2-006	561	187aa	ENSP00000417597.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000487091.1	CLIP2-003	989	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000482424.1	CLIP2-005	971	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000474962.1	CLIP2-007	690	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000491075.1	CLIP2-004	551	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 989 bps,

Version

ENST00000487091.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000351536 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000487091.1 CLIP2-003

Summary