Transcript: ENST00000457942.1 CHCHD3-006

Description

coiled-coil-helix-coiled-coil-helix domain containing 3 [Source:HGNC Symbol;Acc:21906]

Gene Synonyms

FLJ20420, MINOS3, PPP1R22

Location

Chromosome 7: 132,720,509-132,766,848 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 3 domains and features, is associated with 17548 variant alleles and maps to 209 oligo probes.

Gene

This transcript is a product of gene ENSG00000106554.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262570.5	CHCHD3-001	1598	227aa	ENSP00000262570.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5828	A4D1N4 Q9NX63	NM_017812.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000448878.1	CHCHD3-003	1570	232aa	ENSP00000389297.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JRZ6	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000542753.1	CHCHD3-201	898	138aa	ENSP00000440267.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V1K1	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000423635.1	CHCHD3-004	1310	241aa	ENSP00000410425.1	Nonsense mediated decay		F8WAR4	-	-
ENST00000457942.1	CHCHD3-006	559	63aa	ENSP00000403467.1	Nonsense mediated decay		F8WD73	-	-
ENST00000476546.1	CHCHD3-002	1462	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000481152.1	CHCHD3-008	890	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496427.1	CHCHD3-007	721	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000466644.1	CHCHD3-005	1442	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 559 bps, Translation length: 63 residues

Version

ENST00000457942.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000338904 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000457942.1 CHCHD3-006

Summary