Transcript: ENST00000223145.5 GLCCI1-001

Description

glucocorticoid induced transcript 1 [Source:HGNC Symbol;Acc:18713]

Gene Synonyms

FAM117C, GCTR, GIG18, TSSN1

Location

Chromosome 7: 8,008,425-8,128,710 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 12 domains and features, is associated with 57990 variant alleles and maps to 577 oligo probes.

Gene

This transcript is a product of gene ENSG00000106415.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000223145.5	GLCCI1-001	4743	547aa	ENSP00000223145.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34601	Q86VQ1	NM_138426.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000430798.1	GLCCI1-009	581	193aa	ENSP00000396171.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C0Q2	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000414914.1	GLCCI1-008	575	191aa	ENSP00000406569.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C2L5	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000438949.1	GLCCI1-010	873	191aa	ENSP00000393942.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000474269.1	GLCCI1-005	691	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470583.1	GLCCI1-004	555	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496617.2	GLCCI1-011	538	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000482540.1	GLCCI1-002	3942	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000489405.1	GLCCI1-003	1475	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000492797.1	GLCCI1-007	495	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000491947.1	GLCCI1-012	427	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000460897.1	GLCCI1-006	412	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 4,743 bps, Translation length: 547 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q86VQ1

CCDS

This transcript is a member of the Human CCDS set: CCDS34601

Version

ENST00000223145.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000324672 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000223145.5 GLCCI1-001

Summary