Transcript: ENST00000292478.4 PTCD1-001

Description

pentatricopeptide repeat domain 1 [Source:HGNC Symbol;Acc:22198]

Gene Synonyms

KIAA0632

Location

Chromosome 7: 99,014,362-99,036,539 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 14 domains and features, is associated with 12165 variant alleles and maps to 562 oligo probes.

Gene

This transcript is a product of gene ENSG00000106246.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000292478.4	PTCD1-001	5582	700aa	ENSP00000292478.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34691	A4D273 C9JBD7 C9JGL8 C9JQN9 C9JWL7 O75127	NM_015545.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000555673.1	PTCD1-201	2491	749aa	ENSP00000450995.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56496	A4D273 C9JBD7 C9JGL8 C9JQN9 C9JWL7 G3V325	NM_001198879.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000430982.1	PTCD1-007	571	164aa	ENSP00000390530.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JBD7 C9JGL8 C9JQN9 C9JWL7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000430029.1	PTCD1-004	556	144aa	ENSP00000408059.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JBD7 C9JQN9 C9JWL7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000419981.1	PTCD1-002	533	106aa	ENSP00000401600.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JBD7 C9JWL7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000485746.1	PTCD1-005	721	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 7, Transcript length: 5,582 bps, Translation length: 700 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O75127

CCDS

This transcript is a member of the Human CCDS set: CCDS34691

Version

ENST00000292478.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000336391 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000292478.4 PTCD1-001

Summary