Transcript: ENST00000421712.1 BRAT1-005

Description

BRCA1-associated ATM activator 1 [Source:HGNC Symbol;Acc:21701]

Gene Synonyms

BAAT1, C7orf27, MGC22916, RMFSL

Location

About this transcript

This transcript has 5 exons, is annotated with 2 domains and features, is associated with 7985 variant alleles and maps to 145 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000340611.4	BRAT1-001	2915	821aa	ENSP00000339637.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5334	F8WDN5 Q6PJG6	NM_152743.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000421712.1	BRAT1-005	823	168aa	ENSP00000409209.2	Nonsense mediated decay		-	-	-
ENST00000473879.1	BRAT1-006	666	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000493232.1	BRAT1-004	5360	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000469750.1	BRAT1-002	5226	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000467558.1	BRAT1-003	4440	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 823 bps, Translation length: 168 residues

Version

ENST00000421712.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000325070 (version 2)