Description
visual system homeobox 1 [Source:HGNC Symbol;Acc:12723]
Gene Synonyms
CAASDS, KTCN, KTCN1, PPCD, PPD, RINX
Location
Chromosome 20: 25,056,944-25,058,635 reverse strand.
About this transcript
This transcript has 2 exons, is associated with 885 variant alleles and maps to 206 oligo probes.
Gene
This transcript is a product of gene ENSG00000100987.10 Show transcript tableHide transcript table
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000376709.4 | VSX1-001 | 2155 | 365aa | ENSP00000365899.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS13168 | Q9NZR4 | NM_014588.5 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000429762.3 | VSX1-003 | 1977 | 301aa | ENSP00000401690.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58767 | Q9NZR4 | NM_001256272.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000444511.2 | VSX1-004 | 1195 | 236aa | ENSP00000387720.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58766 | Q9NZR4 | NM_001256271.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000424574.1 | VSX1-202 | 1107 | 280aa | ENSP00000399496.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9NZR4 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000376707.3 | VSX1-002 | 948 | 239aa | ENSP00000365897.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS13169 | Q9NZR4 | NM_199425.2 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000451258.1 | VSX1-203 | 921 | 218aa | ENSP00000389654.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9NZR4 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000398332.1 | VSX1-201 | 696 | 143aa | ENSP00000381376.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9NZR4 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000409285.2 | VSX1-005 | 1485 | 280aa | ENSP00000386612.2 | Nonsense mediated decay | Q9NZR4 | - | - | |
| ENST00000409958.2 | VSX1-006 | 1305 | 218aa | ENSP00000387069.2 | Nonsense mediated decay | Q9NZR4 | - | - | |
| ENST00000557285.1 | VSX1-007 | 558 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |