Human (GRCh37.p13)
Description

visual system homeobox 1 [Source:HGNC Symbol;Acc:12723]

Gene Synonyms

CAASDS, KTCN, KTCN1, PPCD, PPD, RINX

Location
About this transcript

This transcript has 4 exons, is annotated with 11 domains and features, is associated with 5024 variant alleles and maps to 200 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeqFlags
ENST00000376709.4VSX1-0012155365aaENSP00000365899.3
 
Protein coding
CCDS13168Q9NZR4 NM_014588.5GENCODE basic
ENST00000429762.3VSX1-0031977301aaENSP00000401690.3
 
Protein coding
CCDS58767Q9NZR4 NM_001256272.1GENCODE basic
ENST00000444511.2VSX1-0041195236aaENSP00000387720.2
 
Protein coding
CCDS58766Q9NZR4 NM_001256271.1GENCODE basic
ENST00000424574.1VSX1-2021107280aaENSP00000399496.1
 
Protein coding
Q9NZR4 -GENCODE basic
ENST00000376707.3VSX1-002948239aaENSP00000365897.3
 
Protein coding
CCDS13169Q9NZR4 NM_199425.2GENCODE basic
ENST00000451258.1VSX1-203921218aaENSP00000389654.1
 
Protein coding
Q9NZR4 -GENCODE basic
ENST00000398332.1VSX1-201696143aaENSP00000381376.1
 
Protein coding
Q9NZR4 -GENCODE basic
ENST00000409285.2VSX1-0051485280aaENSP00000386612.2
 
Nonsense mediated decay
Q9NZR4 --
ENST00000409958.2VSX1-0061305218aaENSP00000387069.2
 
Nonsense mediated decay
Q9NZR4 --
ENST00000557285.1VSX1-007558No protein-
 
Retained intron
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Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,195 bps, Translation length: 236 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NZR4

CCDS

This transcript is a member of the Human CCDS set: CCDS58766

Version

ENST00000444511.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:
OTTHUMT00000334158 (version 1)
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.