Transcript: ENST00000424574.1 VSX1-202

Description

visual system homeobox 1 [Source:HGNC Symbol;Acc:12723]

Gene Synonyms

CAASDS, KTCN, KTCN1, PPCD, PPD, RINX

Location

Chromosome 20: 25,053,245-25,062,996 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 14 domains and features, is associated with 4673 variant alleles and maps to 225 oligo probes.

Gene

This transcript is a product of gene ENSG00000100987.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000376709.4	VSX1-001	2155	365aa	ENSP00000365899.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13168	Q9NZR4	NM_014588.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000429762.3	VSX1-003	1977	301aa	ENSP00000401690.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58767	Q9NZR4	NM_001256272.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000444511.2	VSX1-004	1195	236aa	ENSP00000387720.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58766	Q9NZR4	NM_001256271.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000424574.1	VSX1-202	1107	280aa	ENSP00000399496.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9NZR4	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000376707.3	VSX1-002	948	239aa	ENSP00000365897.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13169	Q9NZR4	NM_199425.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000451258.1	VSX1-203	921	218aa	ENSP00000389654.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9NZR4	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000398332.1	VSX1-201	696	143aa	ENSP00000381376.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9NZR4	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000409285.2	VSX1-005	1485	280aa	ENSP00000386612.2	Nonsense mediated decay		Q9NZR4	-	-
ENST00000409958.2	VSX1-006	1305	218aa	ENSP00000387069.2	Nonsense mediated decay		Q9NZR4	-	-
ENST00000557285.1	VSX1-007	558	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,107 bps, Translation length: 280 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NZR4

Version

ENST00000424574.1

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000424574.1 VSX1-202

Summary