Transcript: ENST00000424574.1 VSX1-202

Description

visual system homeobox 1 [Source:HGNC Symbol;Acc:12723]

Gene Synonyms

CAASDS, KTCN, KTCN1, PPCD, PPD, RINX

Location

Chromosome 20: 25,053,245-25,062,996 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 14 domains and features, is associated with 4673 variant alleles and maps to 225 oligo probes.

Gene

This transcript is a product of gene ENSG00000100987.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000376709.4	VSX1-001	2155	365aa	ENSP00000365899.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13168	Q9NZR4	NM_014588.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000429762.3	VSX1-003	1977	301aa	ENSP00000401690.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58767	Q9NZR4	NM_001256272.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000444511.2	VSX1-004	1195	236aa	ENSP00000387720.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58766	Q9NZR4	NM_001256271.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000424574.1	VSX1-202	1107	280aa	ENSP00000399496.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9NZR4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000376707.3	VSX1-002	948	239aa	ENSP00000365897.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13169	Q9NZR4	NM_199425.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000451258.1	VSX1-203	921	218aa	ENSP00000389654.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9NZR4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000398332.1	VSX1-201	696	143aa	ENSP00000381376.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9NZR4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409285.2	VSX1-005	1485	280aa	ENSP00000386612.2	Nonsense mediated decay		Q9NZR4	-	-
ENST00000409958.2	VSX1-006	1305	218aa	ENSP00000387069.2	Nonsense mediated decay		Q9NZR4	-	-
ENST00000557285.1	VSX1-007	558	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,107 bps, Translation length: 280 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NZR4

Version

ENST00000424574.1

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000424574.1 VSX1-202

Summary