Human (GRCh37.p13)
Description

visual system homeobox 1 [Source:HGNC Symbol;Acc:12723]

Gene Synonyms

CAASDS, KTCN, KTCN1, PPCD, PPD, RINX

Location
About this transcript

This transcript has 5 exons, is annotated with 11 domains and features, is associated with 5024 variant alleles and maps to 231 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeqFlags
ENST00000376709.4VSX1-0012155365aaENSP00000365899.3
 
Protein coding
CCDS13168Q9NZR4 NM_014588.5GENCODE basic
ENST00000429762.3VSX1-0031977301aaENSP00000401690.3
 
Protein coding
CCDS58767Q9NZR4 NM_001256272.1GENCODE basic
ENST00000444511.2VSX1-0041195236aaENSP00000387720.2
 
Protein coding
CCDS58766Q9NZR4 NM_001256271.1GENCODE basic
ENST00000424574.1VSX1-2021107280aaENSP00000399496.1
 
Protein coding
Q9NZR4 -GENCODE basic
ENST00000376707.3VSX1-002948239aaENSP00000365897.3
 
Protein coding
CCDS13169Q9NZR4 NM_199425.2GENCODE basic
ENST00000451258.1VSX1-203921218aaENSP00000389654.1
 
Protein coding
Q9NZR4 -GENCODE basic
ENST00000398332.1VSX1-201696143aaENSP00000381376.1
 
Protein coding
Q9NZR4 -GENCODE basic
ENST00000409285.2VSX1-0051485280aaENSP00000386612.2
 
Nonsense mediated decay
Q9NZR4 --
ENST00000409958.2VSX1-0061305218aaENSP00000387069.2
 
Nonsense mediated decay
Q9NZR4 --
ENST00000557285.1VSX1-007558No protein-
 
Retained intron
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Statistics

Exons: 5, Coding exons: 4, Transcript length: 1,305 bps, Translation length: 218 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NZR4

Version

ENST00000409958.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
OTTHUMT00000334160 (version 1)