Transcript: ENST00000557538.1 HIF1A-004

Description

hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) [Source:HGNC Symbol;Acc:4910]

Gene Synonyms

BHLHE78, HIF-1A, HIF-1alpha, HIF1, HIF1-ALPHA, MOP1, PASD8, bHLHe78

Location

Chromosome 14: 62,164,340-62,214,489 forward strand.

About this transcript

This transcript has 15 exons, is annotated with 24 domains and features, is associated with 21378 variant alleles and maps to 661 oligo probes.

Gene

This transcript is a product of gene ENSG00000100644.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000394997.1	HIF1A-003	3922	827aa	ENSP00000378446.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A8MYV6 B4E2U7 F8W9L0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000337138.4	HIF1A-001	3919	826aa	ENSP00000338018.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9753	B4E2U7 D0VY79 F8W9L0 Q16665	NM_001530.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000323441.6	HIF1A-002	3555	735aa	ENSP00000323326.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9754	Q16665	NM_181054.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000557538.1	HIF1A-004	3468	767aa	ENSP00000451696.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4E2U7 F8W9L0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000539097.1	HIF1A-201	3468	850aa	ENSP00000437955.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58324	B4E2U7 F8W9L0 Q16665	NM_001243084.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000557206.1	HIF1A-012	767	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000555014.1	HIF1A-011	739	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000553999.1	HIF1A-005	616	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000556237.1	HIF1A-007	595	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000557446.1	HIF1A-008	559	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000556827.1	HIF1A-009	752	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000547430.2	HIF1A-010	711	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 14, Transcript length: 3,468 bps, Translation length: 767 residues

Version

ENST00000557538.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000411758 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000557538.1 HIF1A-004

Summary