Transcript: ENST00000438393.1 BRD1-004

Description

bromodomain containing 1 [Source:HGNC Symbol;Acc:1102]

Gene Synonyms

BRL, BRPF1, BRPF2

Location

Chromosome 22: 50,166,931-50,216,861 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 21 domains and features, is associated with 25177 variant alleles and maps to 617 oligo probes.

Gene

This transcript is a product of gene ENSG00000100425.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000216267.8	BRD1-002	4614	1058aa	ENSP00000216267.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14080	O95696 Q659H0	NM_014577.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000404760.1	BRD1-003	4550	1189aa	ENSP00000385858.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O95696 Q659H0 Q9Y4Q3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000457780.2	BRD1-202	4453	995aa	ENSP00000410042.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4E3L9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000404034.1	BRD1-001	4312	1058aa	ENSP00000384076.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14080	O95696 Q659H0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000342989.5	BRD1-201	3179	784aa	ENSP00000345886.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KNX6 Q659H0 Q9Y4Q3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542442.1	BRD1-203	2723	746aa	ENSP00000437514.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H6M9 Q659H0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000438393.1	BRD1-004	3051	509aa	ENSP00000388027.1	Nonsense mediated decay		J3KQ61	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000459821.1	BRD1-005	523	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000494833.1	BRD1-006	409	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000479985.1	BRD1-007	551	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 9, Transcript length: 3,051 bps, Translation length: 509 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000438393.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000317404 (version 3)

Favourite species

All species

Recent locations

Transcript: ENST00000438393.1 BRD1-004

Summary