Transcript: ENST00000420166.1 HMGXB4-004

Description

HMG box domain containing 4 [Source:HGNC Symbol;Acc:5003]

Gene Synonyms

HMG2L1, HMGBCG, THC211630

Location

Chromosome 22: 35,653,445-35,661,563 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 6 domains and features, is associated with 3935 variant alleles and maps to 256 oligo probes.

Gene

This transcript is a product of gene ENSG00000100281.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000216106.5	HMGXB4-002	4047	601aa	ENSP00000216106.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33641	B0QXZ8 B0QXZ9 Q7Z641 Q9UGU5	NM_001003681.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000444518.2	HMGXB4-201	2178	492aa	ENSP00000398302.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0QXZ8 B0QXZ9 Q9UGU5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000455359.1	HMGXB4-003	1325	284aa	ENSP00000415500.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0QXZ8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000420166.1	HMGXB4-004	1257	285aa	ENSP00000401658.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0QXZ8 B0QXZ9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000418170.1	HMGXB4-001	4216	92aa	ENSP00000395532.1	Nonsense mediated decay		F8WDU7	-	-
ENST00000466438.1	HMGXB4-005	575	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000498325.1	HMGXB4-006	867	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000498212.1	HMGXB4-008	778	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000464480.1	HMGXB4-007	559	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 1, Transcript length: 1,257 bps, Translation length: 285 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000420166.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000318106 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000420166.1 HMGXB4-004

Summary