Transcript: ENST00000215882.5 SLC25A1-001

Description

solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 [Source:HGNC Symbol;Acc:10979]

Gene Synonyms

CTP, D2L2AD, SEA, SLC20A3

Location

Chromosome 22: 19,163,095-19,166,343 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 18 domains and features, is associated with 2249 variant alleles and maps to 574 oligo probes.

Gene

This transcript is a product of gene ENSG00000100075.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000215882.5	SLC25A1-001	1641	311aa	ENSP00000215882.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13758	B4DP62 P53007	NM_005984.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000451283.1	SLC25A1-003	1514	208aa	ENSP00000401480.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DP62	NM_001287387.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000461267.1	SLC25A1-005	804	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468824.1	SLC25A1-004	307	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470922.1	SLC25A1-002	1598	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,641 bps, Translation length: 311 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P53007

CCDS

This transcript is a member of the Human CCDS set: CCDS13758

Version

ENST00000215882.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Stop codons

This transcript has a variant, rs11545436, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HapMap-YRI, CSHL-HAPMAP:HAPMAP-CHB, CSHL-HAPMAP:HapMap-CEU, CSHL-HAPMAP:HAPMAP-MKK, CSHL-HAPMAP:HapMap-HCB.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000316441 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000215882.5 SLC25A1-001

Summary