Transcript: ENST00000424393.1 TOP3B-012

Description

topoisomerase (DNA) III beta [Source:HGNC Symbol;Acc:11993]

Gene Synonyms

TOP3B1

Location

Chromosome 22: 22,322,991-22,337,177 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 10 domains and features, is associated with 6075 variant alleles and maps to 187 oligo probes.

Gene

This transcript is a product of gene ENSG00000100038.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000398793.2	TOP3B-003	3107	862aa	ENSP00000381773.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13797	C9J9X4 C9JEI7 C9JEQ1 C9JHR0 C9JKE2 C9JT00 C9JTQ7 O95985	NM_003935.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000457270.1	TOP3B-006	2956	525aa	ENSP00000408282.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KU89	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000357179.5	TOP3B-001	2863	862aa	ENSP00000349705.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13797	C9J9X4 C9JEI7 C9JEQ1 C9JHR0 C9JKE2 C9JT00 C9JTQ7 O95985	NM_001282113.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000413067.2	TOP3B-201	2033	282aa	ENSP00000393118.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EWY2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000424393.1	TOP3B-012	824	246aa	ENSP00000390977.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J9X4 C9JEI7 C9JEQ1 C9JHR0 C9JKE2 C9JT00 C9JTQ7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000434517.1	TOP3B-008	736	21aa	ENSP00000390824.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000430142.1	TOP3B-007	582	121aa	ENSP00000414538.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J9X4 C9JEQ1 C9JHR0 C9JKE2 C9JTQ7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000437103.1	TOP3B-010	571	42aa	ENSP00000387554.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JTQ7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000456075.1	TOP3B-009	561	61aa	ENSP00000391857.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J9X4 C9JEQ1 C9JHR0 C9JTQ7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000437929.1	TOP3B-013	550	122aa	ENSP00000402622.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J9X4 C9JEQ1 C9JHR0 C9JKE2 C9JT00 C9JTQ7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000449704.1	TOP3B-011	543	60aa	ENSP00000404600.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JEQ1 C9JHR0 C9JTQ7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000442653.1	TOP3B-014	400	46aa	ENSP00000390209.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JHR0 C9JTQ7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000444502.1	TOP3B-002	4163	129aa	ENSP00000392480.1	Nonsense mediated decay		C9J9X4 C9JEQ1 C9JHR0 C9JKE2 C9JT00 C9JTQ7 F2Z2A5	-	-
ENST00000457179.1	TOP3B-004	3061	129aa	ENSP00000397221.1	Nonsense mediated decay		C9J9X4 C9JEQ1 C9JHR0 C9JKE2 C9JT00 C9JTQ7 F2Z2A5	-	-
ENST00000436282.1	TOP3B-005	2890	168aa	ENSP00000416451.1	Nonsense mediated decay		H7C4B0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000489581.1	TOP3B-015	789	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000487485.1	TOP3B-016	725	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470338.1	TOP3B-017	624	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 824 bps, Translation length: 246 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000424393.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000320260 (version 11)

Favourite species

All species

Recent locations

Transcript: ENST00000424393.1 TOP3B-012

Summary