Transcript: ENST00000349570.7 CDHR5-002

Description

cadherin-related family member 5 [Source:HGNC Symbol;Acc:7521]

Gene Synonyms

FLJ20219, MU-PCDH, MUCDHL, MUPCDH

Location

Chromosome 11: 617,256-625,169 reverse strand.

About this transcript

This transcript has 14 exons, is annotated with 28 domains and features, is associated with 5579 variant alleles and maps to 565 oligo probes.

Gene

This transcript is a product of gene ENSG00000099834.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000358353.3	CDHR5-001	3635	845aa	ENSP00000351118.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7707	Q9HBB8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000397542.2	CDHR5-201	3489	845aa	ENSP00000380676.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7707	Q9HBB8	NM_021924.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000349570.7	CDHR5-002	2318	651aa	ENSP00000345726.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7708	Q9HBB8	NM_031264.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000526077.1	CDHR5-008	625	190aa	ENSP00000435082.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PLX6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000534311.1	CDHR5-007	550	165aa	ENSP00000436295.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PPW2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000531088.1	CDHR5-006	496	15aa	ENSP00000431505.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000531177.1	CDHR5-004	2816	106aa	ENSP00000437255.1	Nonsense mediated decay		E9PMY2	-	-
ENST00000529337.1	CDHR5-010	427	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000532949.1	CDHR5-009	408	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000531899.1	CDHR5-005	1311	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 14, Transcript length: 2,318 bps, Translation length: 651 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9HBB8

CCDS

This transcript is a member of the Human CCDS set: CCDS7708

Version

ENST00000349570.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000255024 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000349570.7 CDHR5-002

Summary