Transcript: ENST00000371068.5 EFHC1-001

Description

EF-hand domain (C-terminal) containing 1 [Source:HGNC Symbol;Acc:16406]

Gene Synonyms

dJ304B14.2

Location

About this transcript

This transcript has 11 exons, is annotated with 15 domains and features, is associated with 29882 variant alleles and maps to 681 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000371068.5	EFHC1-001	5470	640aa	ENSP00000360107.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4942	B2CKC5 Q5JVL4	NM_018100.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000538167.1	EFHC1-202	5445	621aa	ENSP00000444521.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55021	Q5JVL4	NM_001172420.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000433625.2	EFHC1-201	2020	550aa	ENSP00000416492.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C4B1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000480623.1	EFHC1-002	3442	278aa	ENSP00000434498.1	Nonsense mediated decay		Q5JVL4	-	-
ENST00000491749.1	EFHC1-003	897	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000481466.1	EFHC1-004	607	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 5,470 bps, Translation length: 640 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5JVL4

CCDS

This transcript is a member of the Human CCDS set: CCDS4942

Version

ENST00000371068.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000040905 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.