Transcript: ENST00000454849.1 MSH2-003

Description

mutS homolog 2 [Source:HGNC Symbol;Acc:7325]

Gene Synonyms

COCA1, FCC1, HNPCC, HNPCC1, LCFS2

Location

About this transcript

This transcript has 4 exons, is annotated with 4 domains and features, is associated with 6656 variant alleles and maps to 145 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000406134.1	MSH2-002	3628	921aa	ENSP00000384199.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J809 E9PHA6 Q53RU4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000233146.2	MSH2-001	3307	934aa	ENSP00000233146.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1834	B4DL39 C9J809 P43246 Q53RU4	NM_000251.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543555.1	MSH2-201	3018	868aa	ENSP00000442697.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58709	B4DL39 C9J809 P43246	NM_001258281.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000454849.1	MSH2-003	560	140aa	ENSP00000411482.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J809	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000461394.1	MSH2-005	416	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000467323.1	MSH2-006	313	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 560 bps, Translation length: 140 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000454849.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000323405 (version 1)