Transcript: ENST00000360150.4 ERGIC2-001

Description

ERGIC and golgi 2 [Source:HGNC Symbol;Acc:30208]

Gene Synonyms

ERV41, Erv41, PTX1, cd002

Location

Chromosome 12: 29,490,285-29,534,086 reverse strand.

About this transcript

This transcript has 14 exons, is annotated with 4 domains and features, is associated with 17725 variant alleles and maps to 766 oligo probes.

Gene

This transcript is a product of gene ENSG00000087502.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000360150.4	ERGIC2-001	5014	377aa	ENSP00000353270.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41765	F8VPA6 F8VR88 F8VRW9 Q86TD3 Q96RQ1	NM_016570.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000546839.1	ERGIC2-002	1274	220aa	ENSP00000450042.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VPA6 F8VR88 F8VRW9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000551467.1	ERGIC2-005	765	209aa	ENSP00000448535.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q86TD3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000552132.1	ERGIC2-003	695	175aa	ENSP00000448426.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VR88 F8VRW9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000552155.1	ERGIC2-004	693	203aa	ENSP00000449691.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VRW9 F8VUZ2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000548909.1	ERGIC2-009	645	163aa	ENSP00000448585.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000550353.1	ERGIC2-011	616	172aa	ENSP00000447165.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W0R1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000548441.1	ERGIC2-007	432	71aa	ENSP00000448482.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VRW9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000549182.1	ERGIC2-010	565	49aa	ENSP00000447678.1	Nonsense mediated decay		H0YHS0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000546509.1	ERGIC2-006	308	57aa	ENSP00000447212.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000548098.1	ERGIC2-008	318	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 13, Transcript length: 5,014 bps, Translation length: 377 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96RQ1

CCDS

This transcript is a member of the Human CCDS set: CCDS41765

Version

ENST00000360150.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000403489 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000360150.4 ERGIC2-001

Summary