Transcript: ENST00000528302.1 SF3B2-006

Description

splicing factor 3b, subunit 2, 145kDa [Source:HGNC Symbol;Acc:10769]

Gene Synonyms

Cus1, SAP145, SF3B145, SF3b1, SF3b145, SF3b150

Location

Chromosome 11: 65,819,802-65,836,779 forward strand.

About this transcript

This transcript has 21 exons, is annotated with 25 domains and features, is associated with 7671 variant alleles and maps to 688 oligo probes.

Gene

This transcript is a product of gene ENSG00000087365.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000528302.1	SF3B2-006	3254	878aa	ENSP00000432655.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PIL8 E9PPJ0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000322535.6	SF3B2-001	2903	895aa	ENSP00000318861.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31612	E9PIL8 Q13435	NM_006842.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000530322.1	SF3B2-018	1163	387aa	ENSP00000431520.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PIL8 H0YCG1	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000533595.1	SF3B2-012	1081	353aa	ENSP00000431908.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PIL8 E9PJ04	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000530981.1	SF3B2-015	1080	315aa	ENSP00000436757.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000524627.1	SF3B2-019	841	273aa	ENSP00000435495.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PIL8 E9PJT3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000524475.1	SF3B2-009	432	80aa	ENSP00000435765.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PIL8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000534307.1	SF3B2-008	625	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000529577.1	SF3B2-007	606	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000533421.2	SF3B2-014	407	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000534765.1	SF3B2-004	3932	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000531041.1	SF3B2-002	1440	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000529994.1	SF3B2-016	1004	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000531589.1	SF3B2-010	616	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000525207.1	SF3B2-017	493	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000526653.1	SF3B2-011	329	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 21, Coding exons: 21, Transcript length: 3,254 bps, Translation length: 878 residues

Version

ENST00000528302.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000391351 (version 1)

Annotation Attributes

dotter confirmed [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000528302.1 SF3B2-006

Summary