Transcript: ENST00000347433.4 SRRT-004

Description

serrate RNA effector molecule homolog (Arabidopsis) [Source:HGNC Symbol;Acc:24101]

Gene Synonyms

ARS2, ASR2, Asr2, serrate

Location

Chromosome 7: 100,472,810-100,486,285 forward strand.

About this transcript

This transcript has 20 exons, is annotated with 19 domains and features, is associated with 8140 variant alleles and maps to 734 oligo probes.

Gene

This transcript is a product of gene ENSG00000087087.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000388793.4	SRRT-002	2963	875aa	ENSP00000373445.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47666	Q9BXP5	NM_015908.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000457580.2	SRRT-001	2954	872aa	ENSP00000416553.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47665	Q9BXP5	NM_001128854.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000347433.4	SRRT-004	2904	876aa	ENSP00000314491.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34709	Q9BXP5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000432932.1	SRRT-003	2892	871aa	ENSP00000391852.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47667	Q9BXP5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000448764.1	SRRT-016	1607	499aa	ENSP00000410588.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C3A1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000431645.1	SRRT-018	397	112aa	ENSP00000400912.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JUL9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000445337.1	SRRT-017	446	148aa	ENSP00000398618.1	Non stop decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000423692.1	SRRT-019	727	77aa	ENSP00000396807.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000448716.1	SRRT-006	555	50aa	ENSP00000402025.1	Nonsense mediated decay		F8WE54	-	-
ENST00000449389.1	SRRT-010	448	47aa	ENSP00000400703.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000474896.1	SRRT-008	726	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000478693.1	SRRT-014	655	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000473047.1	SRRT-005	581	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000460194.1	SRRT-009	575	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000487311.1	SRRT-012	563	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000477529.1	SRRT-015	540	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000466432.1	SRRT-011	378	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000469602.1	SRRT-013	376	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 20, Coding exons: 19, Transcript length: 2,904 bps, Translation length: 876 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9BXP5

CCDS

This transcript is a member of the Human CCDS set: CCDS34709

Version

ENST00000347433.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000347168 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000347433.4 SRRT-004

Summary