Transcript: ENST00000508035.1 FAT1-006

Description

FAT atypical cadherin 1 [Source:HGNC Symbol;Acc:3595]

Gene Synonyms

CDHF7, CDHR8, FAT, ME5, hFat1

Location

Chromosome 4: 187,530,404-187,531,224 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 975 variant alleles and maps to 63 oligo probes.

Gene

This transcript is a product of gene ENSG00000083857.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000441802.2	FAT1-001	14786	4588aa	ENSP00000406229.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47177	D6RCE4 Q14517	NM_005245.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000509647.1	FAT1-002	1852	488aa	ENSP00000423736.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RCE4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000512772.1	FAT1-005	1305	368aa	ENSP00000424157.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000507105.1	FAT1-010	854	285aa	ENSP00000423801.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000509927.1	FAT1-003	357	119aa	ENSP00000420869.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y8F5	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000509537.1	FAT1-011	479	52aa	ENSP00000421003.1	Nonsense mediated decay		D6RHE6	-	-
ENST00000512347.1	FAT1-008	512	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000507662.1	FAT1-009	428	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000500085.2	FAT1-004	2224	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000503253.1	FAT1-007	462	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000508035.1	FAT1-006	341	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 341 bps,

Version

ENST00000508035.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000360228 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000508035.1 FAT1-006

Summary