Transcript: ENST00000393344.1 COL19A1-002

Description

collagen, type XIX, alpha 1 [Source:HGNC Symbol;Acc:2196]

Gene Synonyms

COL9A1L, D6S228E

Location

About this transcript

This transcript has 38 exons, is annotated with 28 domains and features, is associated with 63354 variant alleles and maps to 1141 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000322773.4	COL19A1-001	6232	1142aa	ENSP00000316030.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4970	Q14993	NM_001858.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000393344.1	COL19A1-002	5023	764aa	ENSP00000377013.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000455415.1	COL19A1-003	256	36aa	ENSP00000416556.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JVU1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000476656.1	COL19A1-005	1515	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000483745.1	COL19A1-006	550	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000478620.1	COL19A1-004	349	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 38, Coding exons: 38, Transcript length: 5,023 bps, Translation length: 764 residues

Version

ENST00000393344.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000041128 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.