Transcript: ENST00000265113.4 SLC1A3-001

Description

solute carrier family 1 (glial high affinity glutamate transporter), member 3 [Source:HGNC Symbol;Acc:10941]

Gene Synonyms

EA6, EAAT1, GLAST, GLAST1

Location

Chromosome 5: 36,606,457-36,688,436 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 31 domains and features, is associated with 33340 variant alleles and maps to 580 oligo probes.

Gene

This transcript is a product of gene ENSG00000079215.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000265113.4	SLC1A3-001	4170	542aa	ENSP00000265113.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3919	E7EUS7 E7EUV6 P43003	NM_004172.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381918.3	SLC1A3-201	3652	497aa	ENSP00000371343.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54844	E7EUS7 E7EUV6 P43003	NM_001166695.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513903.1	SLC1A3-007	784	101aa	ENSP00000427203.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EUS7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000513646.1	SLC1A3-011	566	106aa	ENSP00000420992.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EUS7 E7EUV6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000416645.2	SLC1A3-009	558	114aa	ENSP00000414078.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DIS2 E7EPV5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000505202.1	SLC1A3-010	540	106aa	ENSP00000424986.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EUS7 E7EUV6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000506725.1	SLC1A3-005	1137	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000505376.1	SLC1A3-015	567	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000509272.1	SLC1A3-013	545	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000514563.1	SLC1A3-012	540	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000502864.1	SLC1A3-014	414	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000512374.1	SLC1A3-003	1096	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000504121.1	SLC1A3-008	583	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000506178.1	SLC1A3-017	547	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 4,170 bps, Translation length: 542 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P43003

CCDS

This transcript is a member of the Human CCDS set: CCDS3919

Version

ENST00000265113.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000207579 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000265113.4 SLC1A3-001

Summary