Transcript: ENST00000389386.3 VPS9D1-002

Description

VPS9 domain containing 1 [Source:HGNC Symbol;Acc:13526]

Gene Synonyms

ATP-BL, ATPBL, C16orf7

Location

About this transcript

This transcript has 15 exons, is annotated with 13 domains and features, is associated with 9648 variant alleles and maps to 472 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000561976.1	VPS9D1-001	2791	561aa	ENSP00000454244.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BM58	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000389386.3	VPS9D1-002	2748	631aa	ENSP00000374037.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42220	H3BM58 Q9Y2B5	NM_004913.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000565023.1	VPS9D1-007	775	232aa	ENSP00000455792.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000563798.1	VPS9D1-003	459	52aa	ENSP00000454889.1	Nonsense mediated decay		H3BNK1	-	-
ENST00000565452.1	VPS9D1-006	178	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000568691.1	VPS9D1-004	838	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000567379.1	VPS9D1-005	694	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 15, Transcript length: 2,748 bps, Translation length: 631 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y2B5

CCDS

This transcript is a member of the Human CCDS set: CCDS42220

Version

ENST00000389386.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000422508 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.