Transcript: ENST00000310112.3 SNCB-001

Description

synuclein, beta [Source:HGNC Symbol;Acc:11140]

Location

About this transcript

This transcript has 7 exons, is annotated with 14 domains and features, is associated with 4918 variant alleles and maps to 433 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000310112.3	SNCB-001	1383	134aa	ENSP00000308057.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4406	G4Y816 Q16143	NM_001001502.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000393693.2	SNCB-002	1234	134aa	ENSP00000377296.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4406	G4Y816 Q16143	NM_003085.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000510387.1	SNCB-005	730	134aa	ENSP00000424073.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4406	G4Y816 Q16143	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000506696.1	SNCB-003	552	134aa	ENSP00000422223.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4406	G4Y816 Q16143	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000508006.1	SNCB-004	969	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 5, Transcript length: 1,383 bps, Translation length: 134 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q16143

CCDS

This transcript is a member of the Human CCDS set: CCDS4406

Version

ENST00000310112.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000253152 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.