Transcript: ENST00000510124.1 CDHR2-004

Description

cadherin-related family member 2 [Source:HGNC Symbol;Acc:18231]

Gene Synonyms

FLJ20124, FLJ20383, PC-LKC, PCDH24, PCLKC

Location

Chromosome 5: 175,970,542-175,995,768 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 1 domain and feature, is associated with 11596 variant alleles and maps to 110 oligo probes.

Gene

This transcript is a product of gene ENSG00000074276.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000510636.1	CDHR2-001	4509	1310aa	ENSP00000424565.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34297	Q9BYE9	NM_001171976.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000261944.5	CDHR2-003	4068	1310aa	ENSP00000261944.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34297	Q9BYE9	NM_017675.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000506348.1	CDHR2-002	4005	1310aa	ENSP00000421078.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34297	Q9BYE9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000510124.1	CDHR2-004	575	62aa	ENSP00000426838.1	Nonsense mediated decay		D6REJ3	-	-
ENST00000513031.1	CDHR2-005	849	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000508085.1	CDHR2-006	577	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000416365.2	CDHR2-007	488	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 575 bps, Translation length: 62 residues

Version

ENST00000510124.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000372204 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000510124.1 CDHR2-004

Summary