Transcript: ENST00000506348.1 CDHR2-002

Description

cadherin-related family member 2 [Source:HGNC Symbol;Acc:18231]

Gene Synonyms

FLJ20124, FLJ20383, PC-LKC, PCDH24, PCLKC

Location

Chromosome 5: 175,992,307-176,022,698 forward strand.

About this transcript

This transcript has 31 exons, is annotated with 65 domains and features, is associated with 16286 variant alleles and maps to 663 oligo probes.

Gene

This transcript is a product of gene ENSG00000074276.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000510636.1	CDHR2-001	4509	1310aa	ENSP00000424565.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34297	Q9BYE9	NM_001171976.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000261944.5	CDHR2-003	4068	1310aa	ENSP00000261944.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34297	Q9BYE9	NM_017675.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000506348.1	CDHR2-002	4005	1310aa	ENSP00000421078.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34297	Q9BYE9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000510124.1	CDHR2-004	575	62aa	ENSP00000426838.1	Nonsense mediated decay		D6REJ3	-	-
ENST00000513031.1	CDHR2-005	849	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000508085.1	CDHR2-006	577	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000416365.2	CDHR2-007	488	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 31, Coding exons: 31, Transcript length: 4,005 bps, Translation length: 1,310 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9BYE9

CCDS

This transcript is a member of the Human CCDS set: CCDS34297

Version

ENST00000506348.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000372202 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000506348.1 CDHR2-002

Summary