Transcript: ENST00000600841.1 NOTCH3-004

Description

notch 3 [Source:HGNC Symbol;Acc:7883]

Gene Synonyms

CADASIL, CASIL, IMF2

Location

About this transcript

This transcript has 2 exons, is associated with 847 variant alleles and maps to 139 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000263388.2	NOTCH3-001	8071	2321aa	ENSP00000263388.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12326	Q9UM47	NM_000435.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000601011.1	NOTCH3-002	3858	1286aa	ENSP00000473138.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R3C9	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000597756.1	NOTCH3-006	559	177aa	ENSP00000468879.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000595514.1	NOTCH3-005	564	117aa	ENSP00000470661.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000600841.1	NOTCH3-004	748	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000595045.1	NOTCH3-003	558	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 748 bps,

Version

ENST00000600841.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000465718 (version 1)