Transcript: ENST00000544760.1 KDM5A-012

Description

lysine (K)-specific demethylase 5A [Source:HGNC Symbol;Acc:9886]

Gene Synonyms

JARID1A, RBBP-2, RBBP2, RBP2

Location

Chromosome 12: 419,057-498,448 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 16 domains and features, is associated with 39344 variant alleles and maps to 287 oligo probes.

Gene

This transcript is a product of gene ENSG00000073614.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000399788.2	KDM5A-001	10763	1690aa	ENSP00000382688.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41736	P29375	NM_001042603.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000382815.4	KDM5A-201	5274	1636aa	ENSP00000372265.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H1F7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000544760.1	KDM5A-012	2338	715aa	ENSP00000440622.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EV89	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000543507.1	KDM5A-009	575	131aa	ENSP00000444251.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GZR8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000536014.1	KDM5A-010	558	122aa	ENSP00000438203.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H322	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000535014.1	KDM5A-011	551	126aa	ENSP00000443854.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GZ99	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000540838.1	KDM5A-003	456	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000544777.1	KDM5A-008	670	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000540168.1	KDM5A-007	523	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000540156.1	KDM5A-004	516	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000535269.1	KDM5A-005	401	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000541335.1	KDM5A-006	378	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 2,338 bps, Translation length: 715 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000544760.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000397816 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000544760.1 KDM5A-012

Summary