Transcript: ENST00000399788.2 KDM5A-001

Description

lysine (K)-specific demethylase 5A [Source:HGNC Symbol;Acc:9886]

Gene Synonyms

JARID1A, RBBP-2, RBBP2, RBP2

Location

Chromosome 12: 389,295-498,620 reverse strand.

About this transcript

This transcript has 28 exons, is annotated with 48 domains and features, is associated with 33312 variant alleles and maps to 1194 oligo probes.

Gene

This transcript is a product of gene ENSG00000073614.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000399788.2	KDM5A-001	10763	1690aa	ENSP00000382688.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41736	P29375	NM_001042603.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000382815.4	KDM5A-201	5274	1636aa	ENSP00000372265.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H1F7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000544760.1	KDM5A-012	2338	715aa	ENSP00000440622.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EV89	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000543507.1	KDM5A-009	575	131aa	ENSP00000444251.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GZR8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000536014.1	KDM5A-010	558	122aa	ENSP00000438203.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H322	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000535014.1	KDM5A-011	551	126aa	ENSP00000443854.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GZ99	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000540838.1	KDM5A-003	456	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000544777.1	KDM5A-008	670	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000540168.1	KDM5A-007	523	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000540156.1	KDM5A-004	516	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000535269.1	KDM5A-005	401	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000541335.1	KDM5A-006	378	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 28, Coding exons: 28, Transcript length: 10,763 bps, Translation length: 1,690 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P29375

CCDS

This transcript is a member of the Human CCDS set: CCDS41736

Version

ENST00000399788.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000397812 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000399788.2 KDM5A-001

Summary