Transcript: ENST00000579658.1 CDH19-002

Description

cadherin 19, type 2 [Source:HGNC Symbol;Acc:1758]

Gene Synonyms

CDH7, CDH7L2

Location

About this transcript

This transcript has 12 exons, is annotated with 35 domains and features, is associated with 45694 variant alleles and maps to 510 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262150.2	CDH19-001	6341	772aa	ENSP00000262150.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11994	F8VVI9 J3QS15 Q96KY9 Q9H159	NM_021153.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540086.1	CDH19-005	1963	490aa	ENSP00000439593.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59325	F8VVI9 J3QS15 Q96KY9 Q9H159	NM_001271028.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000454642.3	CDH19-003	1677	434aa	ENSP00000401998.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VVI9 Q96KY9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000580157.1	CDH19-006	590	66aa	ENSP00000464477.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QS15	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000579658.1	CDH19-002	2588	541aa	ENSP00000463085.1	Nonsense mediated decay		F8VVI9 J3KTP3 J3QS15 Q96KY9	-	-

Summary

Statistics

Exons: 12, Coding exons: 10, Transcript length: 2,588 bps, Translation length: 541 residues

Version

ENST00000579658.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000442284 (version 1)