Transcript: ENST00000546360.1 WIPI1-004

Description

WD repeat domain, phosphoinositide interacting 1 [Source:HGNC Symbol;Acc:25471]

Gene Synonyms

ATG18, ATG18A, Atg18, FLJ10055, WIPI49

Location

Chromosome 17: 66,417,655-66,453,620 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 8 domains and features, is associated with 15083 variant alleles and maps to 473 oligo probes.

Gene

This transcript is a product of gene ENSG00000070540.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262139.5	WIPI1-002	1832	446aa	ENSP00000262139.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11677	G5EA37 Q5MNZ9	NM_017983.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000546360.1	WIPI1-004	1575	364aa	ENSP00000437345.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G5EA37	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000591744.1	WIPI1-010	742	205aa	ENSP00000466270.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ELY0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000585393.1	WIPI1-011	494	54aa	ENSP00000465557.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000589316.1	WIPI1-001	1886	369aa	ENSP00000465470.1	Nonsense mediated decay		K7EK57	-	-
ENST00000592645.1	WIPI1-012	624	82aa	ENSP00000465695.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000589459.1	WIPI1-003	1804	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000591494.1	WIPI1-006	828	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000586815.1	WIPI1-005	780	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000587731.1	WIPI1-007	829	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000590402.1	WIPI1-009	685	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 11, Transcript length: 1,575 bps, Translation length: 364 residues

Version

ENST00000546360.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000448742 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000546360.1 WIPI1-004

Summary