Description
SMG6 nonsense mediated mRNA decay factor [Source:HGNC Symbol;Acc:17809]
Gene Synonyms
C17orf31, EST1A, KIAA0732, SMG-6, hSMG5/7a
Location
Chromosome 17: 1,963,133-2,206,813 reverse strand.
About this transcript
This transcript has 19 exons, is annotated with 24 domains and features, is associated with 114897 variant alleles and maps to 569 oligo probes.
Gene
This transcript is a product of gene ENSG00000070366.9 Show transcript tableHide transcript table
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000544865.1 | SMG6-201 | 6331 | 1388aa | ENSP00000443920.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L176 I3L1W8 I3L355 I3L3A9 I3L421 K7EKV2 K7ELM2 K7ENH7 Q86US8 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000263073.6 | SMG6-001 | 5960 | 1419aa | ENSP00000263073.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS11016 | I3L176 I3L1W8 I3L355 I3L3A9 I3L421 K7EKV2 K7ELM2 K7ENH7 Q86US8 | NM_017575.4 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000354901.4 | SMG6-002 | 3473 | 511aa | ENSP00000346977.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58498 | I3L176 I3L1W8 I3L355 I3L3A9 I3L421 K7EKV2 K7ELM2 K7ENH7 Q86US8 | NM_001256827.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000536871.2 | SMG6-005 | 1865 | 511aa | ENSP00000440283.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58498 | I3L176 I3L1W8 I3L355 I3L3A9 I3L421 K7EKV2 K7ELM2 K7ENH7 Q86US8 | NM_001256828.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000572369.1 | SMG6-008 | 689 | 138aa | ENSP00000465793.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | K7EKV2 K7ELM2 K7ENH7 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000575454.1 | SMG6-010 | 652 | 208aa | ENSP00000460273.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L390 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000570659.1 | SMG6-019 | 592 | 163aa | ENSP00000460898.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L176 I3L355 I3L3A9 I3L421 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000571442.1 | SMG6-015 | 588 | 164aa | ENSP00000459164.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L176 I3L1W8 I3L355 I3L3A9 I3L421 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000575663.1 | SMG6-014 | 574 | 162aa | ENSP00000458635.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L176 I3L355 I3L3A9 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000570606.1 | SMG6-021 | 572 | 123aa | ENSP00000460191.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L355 I3L3A9 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000575176.1 | SMG6-009 | 557 | 124aa | ENSP00000466139.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | K7ELM2 K7ENH7 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000572205.1 | SMG6-018 | 551 | 115aa | ENSP00000466951.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | K7ENH7 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000570668.1 | SMG6-013 | 547 | 119aa | ENSP00000460301.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L3A9 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000573166.1 | SMG6-003 | 4236 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000570756.1 | SMG6-004 | 2426 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000576218.1 | SMG6-020 | 902 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000573827.1 | SMG6-023 | 601 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000573153.1 | SMG6-012 | 552 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000575338.1 | SMG6-007 | 546 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000574501.1 | SMG6-022 | 2419 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000570874.1 | SMG6-011 | 533 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |