Transcript: ENST00000162749.2 TNFRSF1A-001

Description

tumor necrosis factor receptor superfamily, member 1A [Source:HGNC Symbol;Acc:11916]

Gene Synonyms

CD120a, FPF, MS5, TBP1, TNF-R, TNF-R-I, TNF-R55, TNFAR, TNFR1, TNFR1-d2, TNFR55, TNFR60, p55, p55-R, p60

Location

Chromosome 12: 6,437,923-6,451,280 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 38 domains and features, is associated with 6687 variant alleles and maps to 526 oligo probes.

Gene

This transcript is a product of gene ENSG00000067182.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000162749.2	TNFRSF1A-001	2223	455aa	ENSP00000162749.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8542	F5H4T5 J9PH39 P19438	NM_001065.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540022.1	TNFRSF1A-002	1527	412aa	ENSP00000438343.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H061 J9PH39	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000366159.4	TNFRSF1A-004	1339	218aa	ENSP00000380389.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H4T5 P19438	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000539372.1	TNFRSF1A-014	1063	298aa	ENSP00000442059.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H4T5 F5H8A6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000440083.2	TNFRSF1A-013	1034	254aa	ENSP00000413224.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H4T5 F5H6V7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000536194.1	TNFRSF1A-010	581	118aa	ENSP00000442919.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H6Z2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000534885.1	TNFRSF1A-003	2069	122aa	ENSP00000441803.1	Nonsense mediated decay		F5GWJ4	-	-
ENST00000543995.1	TNFRSF1A-005	1531	72aa	ENSP00000442405.1	Nonsense mediated decay		F5H7N1	-	-
ENST00000543048.1	TNFRSF1A-011	571	71aa	ENSP00000439981.1	Nonsense mediated decay		F5H4T5	-	-
ENST00000437813.3	TNFRSF1A-012	634	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000543359.1	TNFRSF1A-015	627	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000535038.1	TNFRSF1A-007	578	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000535958.1	TNFRSF1A-009	568	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000538363.1	TNFRSF1A-008	554	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000537842.1	TNFRSF1A-016	404	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000536717.1	TNFRSF1A-006	1503	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 2,223 bps, Translation length: 455 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P19438

CCDS

This transcript is a member of the Human CCDS set: CCDS8542

Version

ENST00000162749.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000399038 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000162749.2 TNFRSF1A-001

Summary