Transcript: ENST00000264039.2 GPC1-001

Description

glypican 1 [Source:HGNC Symbol;Acc:4449]

Gene Synonyms

glypican

Location

Chromosome 2: 241,375,088-241,407,493 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 9 domains and features, is associated with 18964 variant alleles and maps to 565 oligo probes.

Gene

This transcript is a product of gene ENSG00000063660.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264039.2	GPC1-001	3711	558aa	ENSP00000264039.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2534	P35052	NM_002081.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000420138.1	GPC1-002	1835	598aa	ENSP00000415077.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000425056.1	GPC1-009	1085	362aa	ENSP00000392629.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000455111.1	GPC1-010	841	281aa	ENSP00000390242.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000426280.1	GPC1-007	636	156aa	ENSP00000410251.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J4Y6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000427506.1	GPC1-008	573	191aa	ENSP00000389276.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000466624.1	GPC1-011	782	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000495100.1	GPC1-003	3525	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000469694.1	GPC1-004	2862	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 3,711 bps, Translation length: 558 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P35052

CCDS

This transcript is a member of the Human CCDS set: CCDS2534

Version

ENST00000264039.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000257179 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000264039.2 GPC1-001

Summary