Transcript: ENST00000506184.2 GPBP1-003

Description

GC-rich promoter binding protein 1 [Source:HGNC Symbol;Acc:29520]

Gene Synonyms

DKFZp761C169, GPBP, SSH6, VASCULIN, vasculin

Location

Chromosome 5: 56,469,944-56,558,909 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 6 domains and features, is associated with 44548 variant alleles and maps to 544 oligo probes.

Gene

This transcript is a product of gene ENSG00000062194.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000424459.3	GPBP1-001	4683	493aa	ENSP00000401596.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D4PHA4	NM_022913.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000454432.2	GPBP1-201	4418	493aa	ENSP00000403522.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D4PHA4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000538707.1	GPBP1-202	3369	480aa	ENSP00000440090.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GY92	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000514387.2	GPBP1-005	3310	302aa	ENSP00000421709.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56368	Q86WP2	NM_001203246.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000506184.2	GPBP1-003	2857	473aa	ENSP00000421202.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34162	Q86WP2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000511209.1	GPBP1-006	2243	465aa	ENSP00000422337.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47212	Q86WP2	NM_001127235.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000264779.6	GPBP1-002	1786	480aa	ENSP00000264779.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47211	Q86WP2	NM_001127236.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000309096.4	GPBP1-008	1385	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000515484.2	GPBP1-009	962	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000513524.1	GPBP1-004	529	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000513732.2	GPBP1-007	463	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 10, Transcript length: 2,857 bps, Translation length: 473 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q86WP2

CCDS

This transcript is a member of the Human CCDS set: CCDS34162

Version

ENST00000506184.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000374496 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000506184.2 GPBP1-003

Summary