Transcript: ENST00000078527.4 PIGV-001

Description

phosphatidylinositol glycan anchor biosynthesis, class V [Source:HGNC Symbol;Acc:26031]

Gene Synonyms

FLJ20477, GPI-MT-II, HPMRS1, PIG-V

Location

Chromosome 1: 27,114,486-27,124,889 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 15 domains and features, is associated with 4583 variant alleles and maps to 437 oligo probes.

Gene

This transcript is a product of gene ENSG00000060642.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000374145.1	PIGV-002	2713	493aa	ENSP00000363260.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS287	Q9NUD9	NM_001202554.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000078527.4	PIGV-001	2367	493aa	ENSP00000078527.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS287	Q9NUD9	NM_017837.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000449950.2	PIGV-201	1464	265aa	ENSP00000395156.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DWP9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000431541.1	PIGV-005	716	120aa	ENSP00000388425.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000455364.1	PIGV-006	707	182aa	ENSP00000406080.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000430292.1	PIGV-003	608	72aa	ENSP00000399067.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000472757.1	PIGV-004	932	74aa	ENSP00000436884.1	Nonsense mediated decay		E9PQC7	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 2,367 bps, Translation length: 493 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NUD9

CCDS

This transcript is a member of the Human CCDS set: CCDS287

Version

ENST00000078527.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000011440 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000078527.4 PIGV-001

Summary