Transcript: ENST00000474953.1 ARID4B-012

Description

AT rich interactive domain 4B (RBP1-like) [Source:HGNC Symbol;Acc:15550]

Gene Synonyms

BCAA, BRCAA1, RBBP1L1, RBP1L1, SAP180

Location

Chromosome 1: 235,294,949-235,357,392 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 14 domains and features, is associated with 30236 variant alleles and maps to 989 oligo probes.

Gene

This transcript is a product of gene ENSG00000054267.16 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264183.3	ARID4B-201	6067	1312aa	ENSP00000264183.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31061	Q4LE39	NM_016374.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000366603.2	ARID4B-004	5946	1312aa	ENSP00000355562.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31061	Q4LE39	NM_001206794.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000349213.3	ARID4B-001	5811	1226aa	ENSP00000264184.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31060	Q4LE39	NM_031371.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000418304.1	ARID4B-007	1759	483aa	ENSP00000391497.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000444620.1	ARID4B-006	1647	549aa	ENSP00000416063.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000421364.1	ARID4B-010	5151	1153aa	ENSP00000394663.1	Nonsense mediated decay		Q4LE39	-	-
ENST00000474953.1	ARID4B-012	3463	696aa	ENSP00000420620.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000494543.1	ARID4B-009	453	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471257.1	ARID4B-003	4195	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000491632.1	ARID4B-005	3823	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000466653.1	ARID4B-002	2315	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000474401.1	ARID4B-011	578	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000462969.1	ARID4B-008	273	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 7, Transcript length: 3,463 bps, Translation length: 696 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENST00000474953.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Stop codons

This transcript has a variant, rs66929873, that causes a stop codon to be lost in at least 10% of HapMap or 1000 Genome population(s) ESP6500:African_American, ESP6500:European_American.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000095554 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000474953.1 ARID4B-012

Summary