Transcript: ENST00000512070.2 TRIO-010

Description

trio Rho guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:12303]

Gene Synonyms

ARHGEF23, tgat

Location

Chromosome 5: 14,143,946-14,508,785 forward strand.

About this transcript

This transcript has 57 exons, is annotated with 63 domains and features, is associated with 106506 variant alleles and maps to 1847 oligo probes.

Gene

This transcript is a product of gene ENSG00000038382.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000344204.4	TRIO-001	11100	3097aa	ENSP00000339299.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3883	O75962	NM_007118.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000537187.1	TRIO-201	9689	2921aa	ENSP00000446348.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D3DTD2 E7EWP2 O75962	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513206.1	TRIO-002	7993	2546aa	ENSP00000426342.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EPJ7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000509967.2	TRIO-008	4949	1508aa	ENSP00000445592.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H228	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000344135.5	TRIO-009	4065	596aa	ENSP00000339291.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O75962	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000512070.2	TRIO-010	8907	2309aa	ENSP00000421555.2	Nonsense mediated decay		E7EWP2	-	-
ENST00000515710.1	TRIO-004	1913	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000507714.1	TRIO-014	551	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000512979.1	TRIO-015	292	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000515144.1	TRIO-003	7455	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000510281.1	TRIO-007	861	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000508717.1	TRIO-022	859	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000504606.1	TRIO-013	817	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000509354.1	TRIO-020	801	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000502490.1	TRIO-019	798	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000508343.1	TRIO-017	776	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000502816.1	TRIO-012	736	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000505971.1	TRIO-011	605	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000512303.1	TRIO-018	586	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000503399.1	TRIO-016	553	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000506611.1	TRIO-005	526	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000510757.1	TRIO-023	509	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000508283.1	TRIO-021	486	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000511019.1	TRIO-006	430	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 57, Coding exons: 48, Transcript length: 8,907 bps, Translation length: 2,309 residues

Version

ENST00000512070.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000368114 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000512070.2 TRIO-010

Summary