Description
sorting nexin 1 [Source:HGNC Symbol;Acc:11172]
Gene Synonyms
HsT17379, MGC8664, SNX1A, VPS5, Vps5
Location
Chromosome 15: 64,388,199-64,430,205 forward strand.
About this transcript
This transcript has 15 exons, is annotated with 15 domains and features, is associated with 18457 variant alleles and maps to 518 oligo probes.
Gene
This transcript is a product of gene ENSG00000028528.10 Show transcript tableHide transcript table
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000353874.4 | SNX1-201 | 8077 | 474aa | ENSP00000326668.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A6NKH4 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000261889.5 | SNX1-003 | 3373 | 557aa | ENSP00000261889.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58371 | H0YKT3 Q13596 | NM_003099.4 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000559844.1 | SNX1-001 | 1971 | 522aa | ENSP00000453785.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS32266 | H0YK42 Q13596 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000560829.1 | SNX1-004 | 1869 | 304aa | ENSP00000452651.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0YK42 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000561026.1 | SNX1-002 | 1374 | 457aa | ENSP00000453567.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS32268 | H0YK42 Q13596 | NM_148955.3 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000560861.1 | SNX1-010 | 850 | 70aa | ENSP00000452931.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0YKT3 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000558040.1 | SNX1-009 | 774 | 128aa | ENSP00000452668.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0YK58 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000559061.1 | SNX1-008 | 550 | 19aa | ENSP00000452652.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000380285.3 | SNX1-005 | 8119 | 102aa | ENSP00000369638.3 | Nonsense mediated decay | J3KPH4 | - | - | |
| ENST00000560260.1 | SNX1-006 | 1326 | 107aa | ENSP00000452759.1 | Nonsense mediated decay | H0YKD5 | - | - | |
| ENST00000559389.1 | SNX1-007 | 753 | 111aa | ENSP00000452852.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000559339.1 | SNX1-012 | 101 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000559961.1 | SNX1-014 | 712 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000559401.1 | SNX1-013 | 408 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |