Human (GRCh37.p13)
Description

sorting nexin 1 [Source:HGNC Symbol;Acc:11172]

Gene Synonyms

HsT17379, MGC8664, SNX1A, VPS5, Vps5

Location
About this transcript

This transcript has 15 exons, is annotated with 15 domains and features, is associated with 19231 variant alleles and maps to 366 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeqFlags
ENST00000353874.4SNX1-2018077474aaENSP00000326668.4
 
Protein coding
A6NKH4 -GENCODE basic
ENST00000261889.5SNX1-0033373557aaENSP00000261889.5
 
Protein coding
CCDS58371H0YKT3 Q13596 NM_003099.4GENCODE basic
ENST00000559844.1SNX1-0011971522aaENSP00000453785.1
 
Protein coding
CCDS32266H0YK42 Q13596 -GENCODE basic
ENST00000560829.1SNX1-0041869304aaENSP00000452651.1
 
Protein coding
H0YK42 -GENCODE basic
ENST00000561026.1SNX1-0021374457aaENSP00000453567.1
 
Protein coding
CCDS32268H0YK42 Q13596 NM_148955.3GENCODE basic
ENST00000560861.1SNX1-01085070aaENSP00000452931.1
 
Protein coding
H0YKT3 -CDS 5' incomplete
ENST00000558040.1SNX1-009774128aaENSP00000452668.1
 
Protein coding
H0YK58 -CDS 5' incomplete
ENST00000559061.1SNX1-00855019aaENSP00000452652.1
 
Protein coding
--CDS 3' incomplete
ENST00000380285.3SNX1-0058119102aaENSP00000369638.3
 
Nonsense mediated decay
J3KPH4 --
ENST00000560260.1SNX1-0061326107aaENSP00000452759.1
 
Nonsense mediated decay
H0YKD5 --
ENST00000559389.1SNX1-007753111aaENSP00000452852.1
 
Nonsense mediated decay
--CDS 5' incomplete
ENST00000559339.1SNX1-012101No protein-
 
Processed transcript
---
ENST00000559961.1SNX1-014712No protein-
 
Retained intron
---
ENST00000559401.1SNX1-013408No protein-
 
Retained intron
---
Statistics

Exons: 15, Coding exons: 15, Transcript length: 3,373 bps, Translation length: 557 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q13596

CCDS

This transcript is a member of the Human CCDS set: CCDS58371

Version

ENST00000261889.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
OTTHUMT00000418558 (version 2)
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.