Transcript: ENST00000393943.4 GABRA1-005

Description

gamma-aminobutyric acid (GABA) A receptor, alpha 1 [Source:HGNC Symbol;Acc:4075]

Gene Synonyms

ECA4, EJM, EJM5

Location

Chromosome 5: 161,274,940-161,324,672 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 38 domains and features, is associated with 24982 variant alleles and maps to 408 oligo probes.

Gene

This transcript is a product of gene ENSG00000022355.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000428797.2	GABRA1-001	4273	456aa	ENSP00000393097.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4357	E5RJS3 E5RK60 P14867	NM_001127643.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000444819.1	GABRA1-202	4223	456aa	ENSP00000414232.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4357	E5RJS3 E5RK60 P14867	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000437025.2	GABRA1-004	4087	456aa	ENSP00000415441.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4357	E5RJS3 E5RK60 P14867	NM_001127645.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000420560.1	GABRA1-201	4067	456aa	ENSP00000408041.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4357	E5RJS3 E5RK60 P14867	NM_001127648.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000393943.4	GABRA1-005	2119	456aa	ENSP00000377517.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4357	E5RJS3 E5RK60 P14867	NM_001127644.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000023897.6	GABRA1-002	2083	456aa	ENSP00000023897.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4357	E5RJS3 E5RK60 P14867	NM_000806.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000519621.1	GABRA1-008	583	123aa	ENSP00000430435.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RJS3 E5RK60	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000522651.1	GABRA1-007	571	85aa	ENSP00000430507.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RJS3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000521339.1	GABRA1-006	414	91aa	ENSP00000430895.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RHL6 E5RJS3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000519542.1	GABRA1-009	572	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 2,119 bps, Translation length: 456 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P14867

CCDS

This transcript is a member of the Human CCDS set: CCDS4357

Version

ENST00000393943.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000374402 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000393943.4 GABRA1-005

Summary