Transcript: ENST00000548481.1 CNTN1-010

Description

contactin 1 [Source:HGNC Symbol;Acc:2171]

Gene Synonyms

F3, GP135

Location

Chromosome 12: 41,422,916-41,464,043 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 2 domains and features, is associated with 18161 variant alleles and maps to 184 oligo probes.

Gene

This transcript is a product of gene ENSG00000018236.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000551295.2	CNTN1-001	5557	1018aa	ENSP00000447006.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8737	F8VQW3 F8VUI8 F8VUI9 F8VX96 Q12860	NM_001843.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000347616.1	CNTN1-201	3393	1018aa	ENSP00000325660.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8737	F8VQW3 F8VUI8 F8VUI9 F8VX96 Q12860	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000348761.2	CNTN1-002	3328	1007aa	ENSP00000261160.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8738	Q12860	NM_175038.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000547849.1	CNTN1-004	3125	627aa	ENSP00000448653.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58225	F8VQW3 F8VUI8 F8VUI9 F8VX96 Q12860	NM_001256064.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000547702.1	CNTN1-003	3033	627aa	ENSP00000448004.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58225	F8VQW3 F8VUI8 F8VUI9 F8VX96 Q12860	NM_001256063.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000360099.3	CNTN1-202	1963	627aa	ENSP00000353213.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58225	F8VQW3 F8VUI8 F8VUI9 F8VX96 Q12860	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000552913.1	CNTN1-006	572	72aa	ENSP00000449706.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VQW3 F8VX96	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000551424.1	CNTN1-005	555	62aa	ENSP00000450412.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VQW3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000548005.1	CNTN1-008	553	85aa	ENSP00000447862.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VQW3 F8VUI8 F8VX96	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000552248.1	CNTN1-007	463	90aa	ENSP00000447860.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VQW3 F8VUI8 F8VUI9 F8VX96	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000548481.1	CNTN1-010	512	57aa	ENSP00000449517.1	Nonsense mediated decay		H0YIJ1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000550305.1	CNTN1-009	731	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 512 bps, Translation length: 57 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000548481.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000403699 (version 1)

Annotation Attributes

dotter confirmed [Definitions]

Favourite species

All species

Recent locations

Transcript: ENST00000548481.1 CNTN1-010

Summary